PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097996.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 741aa    MW: 82654.7 Da    PI: 6.6399
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-2331132199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011097996.1  31 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 121
                     99*****************************7444..44459************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011097996.1 122 KNQLLLGIRRA 132
                     9999****997 PP

2Auxin_resp121.85e-40157240183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gtv+g+sdldpvrWpnS+Wrs+k
  XP_011097996.1 157 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTVTGISDLDPVRWPNSHWRSVK 240
                     79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-4916160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-4124146IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-2130131No hitNo description
SMARTSM010191.1E-2331133IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30831133IPR003340B3 DNA binding domain
PfamPF023622.0E-2131132IPR003340B3 DNA binding domain
PfamPF065076.7E-35157240IPR010525Auxin response factor
SuperFamilySSF542771.57E-7610691No hitNo description
PROSITE profilePS5174524.028617701IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MTLQPLTPQE QQDAYLPVEL GTPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL  60
DFSQTPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN  120
EKNQLLLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSCFTVF YNPRASPSEF  180
VIPLSKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTV TGISDLDPVR WPNSHWRSVK  240
VGWDESTAGE KQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGASSFQD VSNEAINGLT  300
WLRGGEQGFN SMNFQSVGMF PWIQQQRLDP MGSSNDFGQQ YQAMLAGGLQ NFGSGELPKH  360
QLMHFQQPVH YLQHSGNHNP VSQQQQVVQP SVSPHMLPAQ TQMLSDNTQR PAEQQVDNQS  420
QEHLKHHTYQ EAFLIQHDKL QQRQSLDIPS PSFTKSDFTN SNSNFSAPMT HSSMQNMLGS  480
ICHEGSGNLL GFSRSGPPIL TEQPTQQSWV PKFAPSPVSG GSNSKPIPPY SGKYGSIEQE  540
SCNLDVQNQA LFGANIDSSG LLMHTTMSGS GTSSVHADMS SMPLGASGHQ SPLYGYVQDS  600
SDVLHSTGQV DQPTPDHTFV KVYKTGSVGR SLDIGRFNSY QELRQELGQM FGIKGLLEDP  660
QRSGWQLVFV DRENDVLLLG DDPWEAFVNN VWYIKILSPE DVLRLGKEEA ESLSRSAVER  720
IHSDETQNPV CSLPSLGSLE Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1141261128388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097995.10.0PREDICTED: auxin response factor 8-like isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A068U2C00.0A0A068U2C0_COFCA; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8